EBRAINS Infrastructure Training on Model Validation - Agenda

(Agenda as of 2024/03/29-00:05 CET)
Tuesday, 4 May 2021

EBRAINS Infrastructure Training on Model Validation

In case of any organisational/technical issues, please contact: training-support@humanbrainproject.eu

Virtual meeting information:

  • This is an online Zoom Training (live talks, demos, hands-on tutorials, Q+A)
  • The Zoom video client software (free of charge, available for Windows, Mac, and Linux and also for iOS and Android) is required

Registration:

  • To register for this training event, an EBRAINS account is needed. EBRAINS registration is free of charge.
  • With your EBRAINS login credentials, you are able to register to this training event on Model Catalog and Validation Framework (also free of charge)
  • [Link to Registration] Registration is closed since 30 April 2021!
  • Registration deadline: 30 April 2021, 5pm (CET)

Meeting Login:

  • Meeting start time is 2pm
  • The Waiting room opens at 1:45pm

Times in the agenda are in shown in Central European Summer Time (e.g. Berlin) and UTC. You can also show e.g.: USA, Australia, Japan, China, India, ...)

Please note: The order and timing of the talks and sessions is now in final version!

.

CEST: 14:00
UTC: 12:00
Part 1: Talks, Demos & Tutorials – Theory + Jupyter Notebook walkthroughs
  • Part 1 is for all interested to get a basic overview about EBRAINS and more theoretical in-depth knowledge to a specific service category EBRAINS is offering. This is followed by practical Jupyter Notebook walkthroughs and introduction to a suite of tools offering new capabilities for your own research.
CEST: 14:00‑14:25
UTC: 12:00‑12:25
(25+5 min)
 Welcome to the Training - Getting started (Talk)

Link to chat channel

Andrew Davison (cnrs)
CEST: 14:30‑14:40
UTC: 12:30‑12:40
(10 min)
 Introduction to EBRAINS (Talk)

Link to chat channel

Andrew Davison (cnrs)
CEST: 14:40‑14:50
UTC: 12:40‑12:50
(10 min)
 EBRAINS Service "Data and Knowledge" (Talk)

Link to chat channel

Ida Aasebø (UIO)
CEST: 14:50‑15:00
UTC: 12:50‑13:00
(10 min)
 EBRAINS Service "Simulation" (Talk)

Link to chat channel

Susanne Kunkel (nmbu)
CEST: 15:00‑15:40
UTC: 13:00‑13:40
(40+5 min)
 Present Web Apps - Models and Tests (Talk + Demo)
  • UseCase: viewer -> view models & tests on app; Model Curation

Link to chat channel

Andrew Davison (CNRS)
CEST: 15:45‑16:00
UTC: 13:45‑14:00
(15 min)
 Break
CEST: 16:00‑16:55
UTC: 14:00‑14:55
(55+5 min)
 SciUnit Framework (Talk + Demos)

Link to chat channel

Rick Gerkin (ICON Lab, ASU)
CEST: 17:00‑17:15
UTC: 15:00‑15:15
(15 min)
 Break
  • Group Foto (Zoom Screenshots)
CEST: 17:15‑18:55
UTC: 15:15‑16:55
(100+5 min)
 SciUnit Framework Practice (Hands-on)
  • Sample model and test implementation

Link to chat channel

Shailesh Appukuttan (CNRS)
CEST: 19:00
UTC: 17:00
End of Day 1

Wednesday, 5 May 2021
CEST: 14:00
UTC: 12:00
Training on Model Validation - Continue on Part 1 - Day 2

Talks, Demos & Tutorials – Theory + Jupyter Notebook walkthroughs

Part 1 is for all interested to get a basic overview about EBRAINS and more theoretical in-depth knowledge to a specific service category EBRAINS is offering. This is followed by practical Jupyter Notebook walkthroughs and introduction to a suite of tools offering new capabilities for your own research.

CEST: 14:00‑14:40
UTC: 12:00‑12:40
(40+5 min)
 Creating and Using a Test Package (Demo)
  • Packaging the tests created in SciUnit hands-on session and publishing it on PyPI

Link to chat channel

Shailesh Appukuttan (CNRS)
CEST: 14:45‑15:25
UTC: 12:45‑13:25
(40+5 min)
 Present Web App - Models and Tests (Hands-on)
  • UseCase: developer --> create, edit models & tests on app using models from SciUnit hands-on

Link to chat channel

Shailesh Appukuttan (CNRS)
CEST: 15:30‑15:45
UTC: 13:30‑13:45
(15 min)
 Break
CEST: 15:45‑16:40
UTC: 13:45‑14:40
(55+5 min)
 VF Python Client (Hands-on)
  • Register models, tests created in SciUnit hands-on & running tests, handling results

Link to chat channel

Shailesh Appukuttan (CNRS)
CEST: 16:45‑17:25
UTC: 14:45‑15:25
(40+5 min)
 Overview of HippoUnit (Talk + Demo)
  • Present tests - dev aspects, results briefly, utility

Link to chat channel

Sára Sáray (ELKH)
CEST: 17:30‑18:00
UTC: 15:30‑16:00
(30 min)
 Break

Part 2: Diving into the details…
  • Each person/group gives a short overview of own/assigned model and the validations intended to be implemented during this session
  • Actively implementing validation tests – either on your own model or models provided by us
CEST: 18:00‑18:55
UTC: 16:00‑16:55
(55+5 min)
 Flash Introductions - Each Model applicant
  • Present model, data, tests to be implemented

Link to chat channel

Each model applicant
CEST: 19:00‑19:25
UTC: 17:00‑17:25
(25+5 min)
 Wrap-up and discussion (Talk)

Link to chat channel

Andrew Davison (cnrs)
CEST: 19:30
UTC: 17:30
End of Day 2

Thursday, 6 May 2021

Model Validation - Day 3

Continue on Part 2: Diving into the details...

CEST: 14:00‑14:25
UTC: 12:00‑12:25
(25+5 min)
 Running Validations on HPC Resources (Talk)
  • Demonstrate validation on Piz-Daint

Link to chat channel

Shailesh Appukuttan (CNRS)
CEST: 14:30‑15:00
UTC: 12:30‑13:00
(30 min)
 Break

Project Work - Model applicants and tutors
CEST: 15:00‑18:00
UTC: 13:00‑16:00
(180 min)
 Hands-on
  • Everyone works on their own project
All
CEST: 18:00
UTC: 16:00
End of Day 3

Friday, 7 May 2021

Model Validation - Day 4

Continue on Project work...

CEST: 14:00‑17:00
UTC: 12:00‑15:00
(180 min)
 Hands-on
  • Everyone works on their own projects
All
CEST: 17:00‑17:15
UTC: 15:00‑15:15
(15 min)
 Break
CEST: 17:15‑18:15
UTC: 15:15‑16:15
(60 min)
 Each group - Present results (Talk + Demo)All
CEST: 18:15
UTC: 16:15
End of Day 4 - End of the Event
Contact: martina.schmalholz@kip.uni-heidelberg.de