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EBRAINS users days - Agenda

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Tuesday, 6 October 2026
09:00
EBRAINS users days -day I: especially for EBARINS newcomers

We recommend to attend "in person" in Heidelberg. For people, who can not make it: The talks during the introduction day (6 October) will also be streamed (free of charge).

Venue: at the EINC in Heidelberg, Germany

Street address: Im Neuenheimer Feld 225a, 69120 Heidelberg, Germany.
Please see the EINC page for tram and parking info.

show a map of the venue (A few hotels are marked in the map with direct links to their own or their booking.com page. Heidelberg has a lot more hotels - listed e.g. on booking.com or on hrs.de)



Registration

To register for the users day :

(To request a free-of-charge EBRAINS users account please use https://ebrains.eu/register)

The registration fee of 25 Euro / day includes the lunch at Heidelberg University mensa, coffee breaks and cookies.

Posters

12 poster boards in the coffee break area are available (contact Björn to reserve one) to highlight tools or services and serve as conversation-starters:

  • The EBRAINS Software Distribution (ESD)
  • BrainScaleS neuromorphic compute system
  • EBRAINS tools-for-teaching




((or linking to the agenda also this ebrains.eu URL can be used.) .

09:00‑09:10
(10 min)		 Welcome to the day
09:10‑10:10
(60 min)		 EBRAINS Reseearch Infrastructue Introduction

An introduction tour through the whole EBRAINS Research Infrastructure.

Moderated by Jan Bjaalie
10:10‑10:40
(30 min)		 Coffee break
10:40‑11:30
(50 min)		 EBRAINS Data and Knowledge services: past, present, future

Introduction + panel discussion with audience feedback

Moderated by Jan Bjaalie
11:30‑12:30
(60 min)		 Lunch at Heidelberg University mensa

12:30‑12:55
(25+5 min)		 TBC

TBC
13:00
Introduction to the basics of the EBRAINS Research Infrastructure
13:00‑14:00
(60 min)		 Session

Introduction to the basics of the EBRAINS Research Infrastructure:

  • EBRAINS account
  • The Collaboratory - collaboration environment for research teams
    • wiki - a place for easy documention
    • drive - a place to store files
  • Lab - An execution environment for python notebooks for no-installation access to EBRAINS tools - an introduction with examples from different project areas
  • Handbook
  • Forms?
Eleni
14:00‑14:30
(30 min)		 Coffee break
14:30
Introductions to different aspects of the EBRAINS RI
14:30‑15:00
(30 min)		 Session

Suggestions:

  • the EBRAINS Software Distribution (ESD): getting ready for scaling up seamlessly
  • EBRAINS workflows: combining tools
  • ...
15:00‑15:20
(20 min)		 Curation-Ready: Data, Models & Software

An introduction on how to prepare for curation of datasets, models or software for inclusion in the EBRAINS RI knowledge graph and data sharing services

TDB
15:20‑15:40
(20 min)		 Computing big: High Performance Compute (HPC) resources

Introduction of the ways the EBRAINS team can help creating a sound proposal for applying for High Performance Compute (HPC) resources for research cases, where local compute power is insufficient.

TBD
15:40‑16:00
(20 min)		 The EBRAINS software distribution (ESD)

The [https://ebrains.eu/esd](EBRAINS software distribution) provides a software environment (container) for using lots of EBRAINS tools in the same setup - from usage on an individual system up to HPC environments. This session demonstrates the process (download, use, scale up).

Eleni (TBC)
16:00‑16:20
(20 min)		 EBRAINS workflows: all tools on deck

Workflows combining different tools potentially running at different sites (e.g. for accessing local data sets and leverage compute power).

Wednesday, 7 October 2026
09:00
EBRAINS user days - day II: hands-on tool tutorials

There slots, 2h each, of parallel offers for hands-on tutorials.

For most of the EBRAINS tools used in the tutorials an EBRAINS account will be needed. Best get your account ahead of time. If that is not possible you can also get a guest account on the spot to be able to participate in the hands-on tool usage sessions.

09:00‑09:15
(15 min)		 (Registration for attendants of day II)
09:15‑09:30
(15 min)		 Get your EBRAINS account ready -- guest accounts for the rest
09:30‑11:30
(120 min)		 Parallel hands-on tutorials

show abstract

Medical Informatics Platform (MIP)TVB - introductionHands-on SpiNNakerKnowledge Graph for data consumers
Birgit Schaffhauser

This tutorial introduces participants to the Medical Informatics Platform (MIP), a federated environment for secure discovery and analysis of distributed health data.
more info

Spase Petkoski

The Virtual Brain (TVB) session showing the basing building block of TVB. more info

Andrew Rowley

Tutorial for the digital real time neuromorphic compute system SpiNNaker-1 more info

Andrew Davison

Covering both the access via browser and via API
11:30‑12:30
(60 min)		 Lunch
12:30‑14:30
(120 min)		 Parallel hands-on tutorials

(Details to be provided)

Siibra tools (TBC)TVB - resting state modellingNEST and/or NEST/MLKnowledge Graph for data providers

Spase Petkoski

This second TVB session will describe fast back-end implementation of the Montbrio-Pazo-Roxin model used for modeling resting state fMRI . This is a based on a more detailed showcase Degeneracy in neuroscience, as well as virtual brains with neuromodulation through the example of dopaminergic activity DOI 10.25493/9KR4-BNK

Dennis Terhorst

TBC

Andrew Davison

Covering both browser- and API-access
14:30‑15:00
(30 min)		 Coffee break
15:00‑17:00
(120 min)		 Parallel hands-on tutorials

More information about the tutorials in this slot:

show abstract

Introduction to simulating neural networks using ArborHands-on BrainScaleSHuman Intracerebral EEG Platform (HIP) powered by CHORUSCuration tutorial Large-Scale Simulation-Based Inference with TVB.
Thorsten Hater

Target audience: Researchers interested in detailed cell models

This tutorial will show the basics of designing detailed cell models, how to run them using Arbor, and how to grow them into larger networks. more info

Intro: Yannik Stradmann

In this tutorial, participants have the chance to explore BrainScaleS-2, one of the world’s most advanced analog platforms for neuromorphic computing. more info

Birgit Schaffhauser

This tutorial introduces participants to CHORUS, a trusted research environment for secure and collaborative data-driven research. more info

This is mainly intended as a Questions & Answers session, where data-providers can bring their issues/requests and discuss them on-site with curation team members.

Michiel van der Vlag
17:00
End of the hands-on tools trainings



Infos:

  • Directly after the EBRAINS users days the education department of the EBRAINS 2.0 project organizes a students day. Please find the agenda of the students day here
  • If you want to experience another hands-on tutorial: The "Virtual users days" happen from 12-14 October 2026