EBRAINS users days - Agenda

We recommend to attend "in person" in Heidelberg. For people, who can not make it: The talks during the introduction day (6 October) will also be streamed (free of charge).

Venue: at the EINC in Heidelberg, Germany

Street address: Im Neuenheimer Feld 225a, 69120 Heidelberg, Germany.
Please see the EINC page for tram and parking info.

Registration

The registration fee of 25 Euro / day includes the lunch at Heidelberg University mensa, coffee breaks and cookies.
To register for the users day :

• if you are an "EBRAINS 2.0 (or friends) project member", please use the registration form for project members
• if you have an EBRAINS account (recommended) please register here with EBRAINS account
• else (i.e. if you do not (yet) have an EBRAINS account), please register here

(To request a free-of-charge EBRAINS users account please use https://ebrains.eu/register)

Posters

12 poster boards in the coffee break area are available (contact Björn to reserve one) to highlight tools or services and serve as conversation-starters:

• The EBRAINS Software Distribution (ESD)
• BrainScaleS neuromorphic compute system
• EBRAINS tools-for-teaching

(for linking to the agenda this ebrains.eu URL can be used.) .

Collect your name-tag and a cookie.

An introduction tour through the whole EBRAINS Research Infrastructure.

Introduction + panel discussion with audience feedback

Instruct-ERIC is a pan-European distributed research infrastructure making high-end technologies and methods in structural biology available to users. In July, EBRAINS and Instruct-ERIC signed a Memorandum of Understanding, establishing a strategic collaboration to strengthen links between digital neuroscience and structural biology research infrastructures in Europe.

Introduction to the basics of the EBRAINS Research Infrastructure:

• EBRAINS account
• The Collaboratory - collaboration environment for research teams
  • wiki - a place for easy documention
  • drive - a place to store files
• Lab - An execution environment for python notebooks for no-installation access to EBRAINS tools - an introduction with examples from different project areas
• Handbook
• Forms?

An introduction on how to prepare for curation of datasets, models or software for inclusion in the EBRAINS RI knowledge graph and data sharing services

Introduction of the ways the EBRAINS team can help creating a sound proposal for applying for High Performance Compute (HPC) resources for research cases, where local compute power is insufficient.

The EBRAINS software distribution provides a software environment (container) for using lots of EBRAINS tools in the same setup - from usage on an individual system up to HPC environments. This session demonstrates the process (download, use, scale up).

Workflows combining different tools potentially running at different sites (e.g. for accessing local data sets and leverage compute power).

Workflows introductions to the cerebellar models repo and the Cerebellar-hub

There slots, 2h each, of parallel offers for hands-on tutorials.

For most of the EBRAINS tools used in the tutorials an EBRAINS account will be needed. Best get your account ahead of time. If that is not possible you can also get a guest account on the spot to be able to participate in the hands-on tool usage sessions.

Medical Informatics Platform (MIP)

In this tutorial, participants will explore the Medical Informatics Platform (MIP), a federated research environment that enables secure discovery and analysis of distributed health data across institutions. Using the Public MIP instance, participants will gain an overview of the platform's architecture, learn about the principles of federated data sharing and analysis, and discover how researchers can access and work with available datasets through the MIP ecosystem. After a short introduction to the platform and its federated setup, participants will be guided through the data catalogue, the newly developed user interface, and a prepared analysis workflow. This hands-on session will provide practical insights into how the platform supports collaborative medical research while maintaining data sovereignty and privacy.

• Each participant will have the opportunity to follow the prepared tutorial and explore the platform's capabilities directly. Participants will use the Public MIP instance and require an EBRAINS account (available free of charge at https://ebrains.eu/register) to access the platform and the tutorial datasets.
• The tutorial will be conducted entirely through the MIP web interface, and participants only need a web browser on their own laptop.

The Virtual Brain (TVB) - introduction

The TVB session will be showing the basing building block of TVB, how to set up and run a whole-brain simulation, explained through use-cases of modeling epileptic seizures, virtual resection and stimulation. (See here for additional information)

SpiNNaker

In this tutorial, participants will learn how to access and use SpiNNaker, one of the world's largest neuromorphic computing platforms. After an initial introduction to the platform and the PyNN language on SpiNNaker, the participants will then be able to access the EBRAINS Jupyter Lab using a web browser on a laptop (a mobile phone is not recommended for this) and use this to follow exercises allowing them to build up their knowledge of running PyNN scripts on SpiNNaker. The workshop leader will be on hand throughout the session to help with any problems, and to answer any additional questions about the system and its use.

• Participants can use their EBRAINS account (available at https://ebrains.eu/register free of charge) or can use a guest account during the tutorial. With an own account the participants can continue using the neuromorphic compute systems also after the end of the tutorial.
  
  

Knowledge Graph for data consumers

Description pending

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More information about the tutorials in this slot:

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Infos:

• On the day after the EBRAINS users days the education department of the EBRAINS 2.0 project organizes a students day Please find the agenda of the students day (8 October 2026). here
• If you want to experience another hands-on tutorial (only online, though): The "Virtual users days" happen from 12-14 October 2026