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EBRAINS Infrastructure Training on Model Validation - Agenda
| Tuesday, 4 May 2021 |
| EBRAINS Infrastructure Training on Model Validation
In case of any organisational/technical issues, please contact:
training-support@humanbrainproject.eu
Virtual meeting information:
- This is an online Zoom Training (live talks, demos, hands-on tutorials, Q+A)
- The Zoom video client software (free of charge, available for Windows, Mac, and Linux and also for iOS and Android) is required
Registration:
- To register for this training event, an EBRAINS account is needed. EBRAINS registration is free of charge.
- With your EBRAINS login credentials, you are able to register to this training event on Model Catalog and Validation Framework (also free of charge)
- [Link to Registration] Registration is closed since 30 April 2021!
- Registration deadline: 30 April 2021, 5pm (CET)
Meeting Login:
- Meeting start time is 2pm
- The Waiting room opens at 1:45pm
Times in the agenda are in shown in Central European Summer Time (e.g. Berlin) and UTC. You can also show e.g.: USA, Australia, Japan, China, India, ...)
Please note: The order and timing of the talks and sessions is now in final version!
.
|
CST: 20:00
| Part 1: Talks, Demos & Tutorials – Theory + Jupyter Notebook walkthroughs
- Part 1 is for all interested to get a basic overview about EBRAINS and more theoretical in-depth knowledge to a specific service category EBRAINS is offering. This is followed by practical Jupyter Notebook walkthroughs and introduction to a suite of tools offering new capabilities for your own research.
|
CST: 20:00‑20:25
(25+5 min) | | Welcome to the Training - Getting started (Talk) Link to chat channel | Andrew Davison (cnrs) |
CST: 20:30‑20:40
(10 min) | | Introduction to EBRAINS (Talk) Link to chat channel | Andrew Davison (cnrs) |
CST: 20:40‑20:50
(10 min) | | EBRAINS Service "Data and Knowledge" (Talk) Link to chat channel | Ida Aasebø (UIO) |
CST: 20:50‑21:00
(10 min) | | EBRAINS Service "Simulation" (Talk) Link to chat channel | Susanne Kunkel (nmbu) |
CST: 21:00‑21:40
(40+5 min) | | Present Web Apps - Models and Tests (Talk + Demo)
- UseCase: viewer -> view models & tests on app; Model Curation
Link to chat channel | Andrew Davison (CNRS) |
CST: 21:45‑22:00
(15 min) | | Break |
CST: 22:00‑22:55
(55+5 min) | | SciUnit Framework (Talk + Demos)
Link to chat channel | Rick Gerkin (ICON Lab, ASU) |
CST: 23:00‑23:15
(15 min) | | Break
- Group Foto (Zoom Screenshots)
|
CST: 23:15‑00:55
(100+5 min) | | SciUnit Framework Practice (Hands-on)
- Sample model and test implementation
Link to chat channel | Shailesh Appukuttan (CNRS) |
CST: 01:00
| End of Day 1 |
| Wednesday, 5 May 2021 |
CST: 20:00
| Training on Model Validation - Continue on Part 1 - Day 2
Talks, Demos & Tutorials – Theory + Jupyter Notebook walkthroughs
Part 1 is for all interested to get a basic overview about EBRAINS and more theoretical in-depth knowledge to a specific service category EBRAINS is offering. This is followed by practical Jupyter Notebook walkthroughs and introduction to a suite of tools offering new capabilities for your own research.
|
CST: 20:00‑20:40
(40+5 min) | | Creating and Using a Test Package (Demo)
- Packaging the tests created in SciUnit hands-on session
and publishing it on PyPI
Link to chat channel | Shailesh Appukuttan (CNRS) |
CST: 20:45‑21:25
(40+5 min) | | Present Web App - Models and Tests (Hands-on)
- UseCase: developer --> create, edit models & tests on app using models from SciUnit hands-on
Link to chat channel | Shailesh Appukuttan (CNRS) |
CST: 21:30‑21:45
(15 min) | | Break |
CST: 21:45‑22:40
(55+5 min) | | VF Python Client (Hands-on)
- Register models, tests created in SciUnit hands-on & running tests, handling results
Link to chat channel | Shailesh Appukuttan (CNRS) |
CST: 22:45‑23:25
(40+5 min) | | Overview of HippoUnit (Talk + Demo)
- Present tests - dev aspects, results briefly, utility
Link to chat channel | Sára Sáray (ELKH) |
CST: 23:30‑00:00
(30 min) | | Break |
| Part 2: Diving into the details…
- Each person/group gives a short overview of own/assigned model and the validations intended to be implemented during this session
- Actively implementing validation tests – either on your own model or models provided by us
|
CST: 00:00‑00:55
(55+5 min) | | Flash Introductions - Each Model applicant
- Present model, data, tests to be implemented
Link to chat channel | Each model applicant |
CST: 01:00‑01:25
(25+5 min) | | Wrap-up and discussion (Talk) Link to chat channel | Andrew Davison (cnrs) |
CST: 01:30
| End of Day 2 |
| Thursday, 6 May 2021 |
| Model Validation - Day 3
Continue on Part 2:
Diving into the details...
|
CST: 20:00‑20:25
(25+5 min) | | Running Validations on HPC Resources (Talk)
- Demonstrate validation on Piz-Daint
Link to chat channel | Shailesh Appukuttan (CNRS) |
CST: 20:30‑21:00
(30 min) | | Break |
| Project Work - Model applicants and tutors |
CST: 21:00‑00:00
(180 min) | | Hands-on
- Everyone works on their own project
| All |
CST: 00:00
| End of Day 3 |
| Friday, 7 May 2021 |
| Model Validation - Day 4
Continue on Project work...
|
CST: 20:00‑23:00
(180 min) | | Hands-on
- Everyone works on their own projects
| All |
CST: 23:00‑23:15
(15 min) | | Break |
CST: 23:15‑00:15
(60 min) | | Each group - Present results (Talk + Demo) | All |
CST: 00:15
| End of Day 4 - End of the Event |
Contact: martina.schmalholz@kip.uni-heidelberg.de
Human Brain Project
