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EBRAINS Infrastructure Training on Model Validation - Agenda

Tuesday, 4 May 2021

EBRAINS Infrastructure Training on Model Validation

In case of any organisational/technical issues, please contact: training-support@humanbrainproject.eu

Virtual meeting information:

  • This is an online Zoom Training (live talks, demos, hands-on tutorials, Q+A)
  • The Zoom video client software (free of charge, available for Windows, Mac, and Linux and also for iOS and Android) is required

Registration:

  • To register for this training event, an EBRAINS account is needed. EBRAINS registration is free of charge.
  • With your EBRAINS login credentials, you are able to register to this training event on Model Catalog and Validation Framework (also free of charge)
  • [Link to Registration] Registration is closed since 30 April 2021!
  • Registration deadline: 30 April 2021, 5pm (CET)

Meeting Login:

  • Meeting start time is 2pm
  • The Waiting room opens at 1:45pm

Times in the agenda are in shown in Central European Summer Time (e.g. Berlin) and UTC. You can also show e.g.: USA, Australia, Japan, China, India, ...)

Please note: The order and timing of the talks and sessions is now in final version!

.

AEST: 22:00
ACST: 21:30
ACST: 21:30
AWST: 20:00
Part 1: Talks, Demos & Tutorials – Theory + Jupyter Notebook walkthroughs
  • Part 1 is for all interested to get a basic overview about EBRAINS and more theoretical in-depth knowledge to a specific service category EBRAINS is offering. This is followed by practical Jupyter Notebook walkthroughs and introduction to a suite of tools offering new capabilities for your own research.
AEST: 22:00‑22:25
ACST: 21:30‑21:55
ACST: 21:30‑21:55
AWST: 20:00‑20:25
(25+5 min)		 Welcome to the Training - Getting started (Talk)

Link to chat channel

Andrew Davison (cnrs)
AEST: 22:30‑22:40
ACST: 22:00‑22:10
ACST: 22:00‑22:10
AWST: 20:30‑20:40
(10 min)		 Introduction to EBRAINS (Talk)

Link to chat channel

Andrew Davison (cnrs)
AEST: 22:40‑22:50
ACST: 22:10‑22:20
ACST: 22:10‑22:20
AWST: 20:40‑20:50
(10 min)		 EBRAINS Service "Data and Knowledge" (Talk)

Link to chat channel

Ida Aasebø (UIO)
AEST: 22:50‑23:00
ACST: 22:20‑22:30
ACST: 22:20‑22:30
AWST: 20:50‑21:00
(10 min)		 EBRAINS Service "Simulation" (Talk)

Link to chat channel

Susanne Kunkel (nmbu)
AEST: 23:00‑23:40
ACST: 22:30‑23:10
ACST: 22:30‑23:10
AWST: 21:00‑21:40
(40+5 min)		 Present Web Apps - Models and Tests (Talk + Demo)
  • UseCase: viewer -> view models & tests on app; Model Curation

Link to chat channel

Andrew Davison (CNRS)
AEST: 23:45‑00:00
ACST: 23:15‑23:30
ACST: 23:15‑23:30
AWST: 21:45‑22:00
(15 min)		 Break
AEST: 00:00‑00:55
ACST: Tue, 4 May 23:30‑00:25
ACST: Tue, 4 May 23:30‑00:25
AWST: Tue, 4 May 22:00‑22:55
(55+5 min)		 SciUnit Framework (Talk + Demos)

Link to chat channel

Rick Gerkin (ICON Lab, ASU)
AEST: 01:00‑01:15
ACST: 00:30‑00:45
ACST: 00:30‑00:45
AWST: Tue, 4 May 23:00‑23:15
(15 min)		 Break
  • Group Foto (Zoom Screenshots)
AEST: 01:15‑02:55
ACST: 00:45‑02:25
ACST: 00:45‑02:25
AWST: Tue, 4 May 23:15‑00:55
(100+5 min)		 SciUnit Framework Practice (Hands-on)
  • Sample model and test implementation

Link to chat channel

Shailesh Appukuttan (CNRS)
AEST: 03:00
ACST: 02:30
ACST: 02:30
AWST: 01:00
End of Day 1

Wednesday, 5 May 2021
AEST: 22:00
ACST: 21:30
ACST: 21:30
AWST: 20:00
Training on Model Validation - Continue on Part 1 - Day 2

Talks, Demos & Tutorials – Theory + Jupyter Notebook walkthroughs

Part 1 is for all interested to get a basic overview about EBRAINS and more theoretical in-depth knowledge to a specific service category EBRAINS is offering. This is followed by practical Jupyter Notebook walkthroughs and introduction to a suite of tools offering new capabilities for your own research.

AEST: 22:00‑22:40
ACST: 21:30‑22:10
ACST: 21:30‑22:10
AWST: 20:00‑20:40
(40+5 min)		 Creating and Using a Test Package (Demo)
  • Packaging the tests created in SciUnit hands-on session and publishing it on PyPI

Link to chat channel

Shailesh Appukuttan (CNRS)
AEST: 22:45‑23:25
ACST: 22:15‑22:55
ACST: 22:15‑22:55
AWST: 20:45‑21:25
(40+5 min)		 Present Web App - Models and Tests (Hands-on)
  • UseCase: developer --> create, edit models & tests on app using models from SciUnit hands-on

Link to chat channel

Shailesh Appukuttan (CNRS)
AEST: 23:30‑23:45
ACST: 23:00‑23:15
ACST: 23:00‑23:15
AWST: 21:30‑21:45
(15 min)		 Break
AEST: 23:45‑00:40
ACST: 23:15‑00:10
ACST: 23:15‑00:10
AWST: 21:45‑22:40
(55+5 min)		 VF Python Client (Hands-on)
  • Register models, tests created in SciUnit hands-on & running tests, handling results

Link to chat channel

Shailesh Appukuttan (CNRS)
AEST: 00:45‑01:25
ACST: 00:15‑00:55
ACST: 00:15‑00:55
AWST: Wed, 5 May 22:45‑23:25
(40+5 min)		 Overview of HippoUnit (Talk + Demo)
  • Present tests - dev aspects, results briefly, utility

Link to chat channel

Sára Sáray (ELKH)
AEST: 01:30‑02:00
ACST: 01:00‑01:30
ACST: 01:00‑01:30
AWST: Wed, 5 May 23:30‑00:00
(30 min)		 Break

Part 2: Diving into the details…
  • Each person/group gives a short overview of own/assigned model and the validations intended to be implemented during this session
  • Actively implementing validation tests – either on your own model or models provided by us
AEST: 02:00‑02:55
ACST: 01:30‑02:25
ACST: 01:30‑02:25
AWST: 00:00‑00:55
(55+5 min)		 Flash Introductions - Each Model applicant
  • Present model, data, tests to be implemented

Link to chat channel

Each model applicant
AEST: 03:00‑03:25
ACST: 02:30‑02:55
ACST: 02:30‑02:55
AWST: 01:00‑01:25
(25+5 min)		 Wrap-up and discussion (Talk)

Link to chat channel

Andrew Davison (cnrs)
AEST: 03:30
ACST: 03:00
ACST: 03:00
AWST: 01:30
End of Day 2

Thursday, 6 May 2021

Model Validation - Day 3

Continue on Part 2: Diving into the details...

AEST: 22:00‑22:25
ACST: 21:30‑21:55
ACST: 21:30‑21:55
AWST: 20:00‑20:25
(25+5 min)		 Running Validations on HPC Resources (Talk)
  • Demonstrate validation on Piz-Daint

Link to chat channel

Shailesh Appukuttan (CNRS)
AEST: 22:30‑23:00
ACST: 22:00‑22:30
ACST: 22:00‑22:30
AWST: 20:30‑21:00
(30 min)		 Break

Project Work - Model applicants and tutors
AEST: 23:00‑02:00
ACST: 22:30‑01:30
ACST: 22:30‑01:30
AWST: 21:00‑00:00
(180 min)		 Hands-on
  • Everyone works on their own project
All
AEST: 02:00
ACST: 01:30
ACST: 01:30
AWST: 00:00
End of Day 3

Friday, 7 May 2021

Model Validation - Day 4

Continue on Project work...

AEST: 22:00‑01:00
ACST: 21:30‑00:30
ACST: 21:30‑00:30
AWST: 20:00‑23:00
(180 min)		 Hands-on
  • Everyone works on their own projects
All
AEST: 01:00‑01:15
ACST: 00:30‑00:45
ACST: 00:30‑00:45
AWST: Fri, 7 May 23:00‑23:15
(15 min)		 Break
AEST: 01:15‑02:15
ACST: 00:45‑01:45
ACST: 00:45‑01:45
AWST: Fri, 7 May 23:15‑00:15
(60 min)		 Each group - Present results (Talk + Demo)All
AEST: 02:15
ACST: 01:45
ACST: 01:45
AWST: 00:15
End of Day 4 - End of the Event
Contact: martina.schmalholz@kip.uni-heidelberg.de