Wednesday, 12 March 2025 | |||||||||||||||
08:20 | EBRAINS tutorials and users dayAccelerate Your Neuroscience Research with EBRAINSEBRAINS tutorials and users day - 12 March 2025 in Heidelberg (Germany)The EBRAINS tutorials and users day is for two audiences: newcomers to the EBRAINS Research Infrastructure (introductions, overviews, beginner hands-on tutorials) and seasoned EBRAINS users for advanced tutorials and user discussion groups with developers.
Registration
VenueEuropean Institute for Neuromorphic Computing (EINC), Airports
Train stationHeidelberg Main Station (Heidelberg Hauptbahnhof, use bahn.de for time table information) From Heidelberg Main station to the institute:
Option for participants with young children (age 1.5 -6 years)We can book child care (for children age 1.5 to 6 years) at the universities KidsClub, 7 min walking distance from the meeting location. This option is (only) available until end of January (and only for children with both measles vaccinations completed). Please contact kindler@kip.uni-heidelberg.de for this option. | ||||||||||||||
08:20‑08:50 (30 min) | Registration | ||||||||||||||
08:50 | Plenary -- can also be visited online | ||||||||||||||
08:50‑08:58 (8+2 min) | Welcome to the meeting | ||||||||||||||
09:00‑09:08 (8+2 min) | Welcome to the EBRAINS tutorials and users day | ||||||||||||||
09:10‑09:35 (25+5 min) | Research with EBRAINS - a high level overview A high level introduction for researchers into the possibilities, tools and workflows offered by the EBRAINS Research Infrastructure today = for immediate use in own research projects | Katrin Amunts (juelich) | |||||||||||||
09:40 | Plenary: tools in action Briefly showing some of the tools / services / hardware systems or software environment, which are part of the EBRAINS research infrastructure in action -- "teasers" for the tutorials, starting after the coffee break. | ||||||||||||||
09:40‑09:45 (5+2 min) | Science software environment: The EBRAINS software distribution (ESD) | ||||||||||||||
09:47‑09:52 (5+2 min) | Science tools in action: working with data from the EBRAINS Knowledge Graph The EBRAINS Knowledge Graph: Tutorials offered: Introductory, Extended and Advanced | ||||||||||||||
09:54‑09:59 (5+2 min) | Science tools in action: Arbor, multicompartmental simulation library Tutorial offered: Hands-on Introduction to Arbor for beginners show abstract | ||||||||||||||
10:01‑10:06 (5+2 min) | Science tools in action: NEST Desktop Note: there are also two specific NEST related tutorials offered (see below):
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10:08‑10:13 (5+2 min) | Science tools in action: TVB (The Virtual Brain) Tutorial offered: model building and simulation, inference | Spase Petkoski (amu) | |||||||||||||
10:15‑10:20 (5+2 min) | Science tools in action: Neuromorphic compute system SpiNNaker SpiNNaker is a highly programmable neuromorphic platform, designed to simulate large spiking neural networks in real-time. It uses many conventional low-power ARM processors executing customizable software in parallel, coupled with a specialized multicast network enabling the transmission of many spikes to multiple target neurons. Tutorial offered: Beginners level tutorial. show abstract | Andrew Rowley (uman) | |||||||||||||
10:22‑10:27 (5+2 min) | Science tools in action: QUINT workflow (workflow to support atlas-based quantification) Tutorial offered: hands-on tutorial for beginners show abstract | ||||||||||||||
10:29‑10:34 (5+2 min) | Science tool in action: tauRAMD (computation of relative residence times (τ) or dissociation rates of protein-ligand complexes) and SDA (Simulation of Diffusional Association) Tutorial offered: Hands-on introduction | ||||||||||||||
10:36‑10:41 (5+2 min) | Science tools in action: Snudda (building networks of neurons with synaptic connectivity based on the morphologies of reconstructed neurons and touch detection)
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10:43‑10:48 (5+2 min) | Science tool in action: Building reproducible workflows with EBRAINS atlases using siibra-python Tutorial offered: siibra entry level show abstract | ||||||||||||||
10:50‑10:55 (5+2 min) | Science tools in action: Neuromorphic Compute system BrainScaleS BrainScaleS-2 is one of the world’s most versatile platforms for neuromorphic computing. Its software-controlled analog processing core emulates the dynamics of biological neurons and synapses to enable the exploration of spiking neural networks on a unique substrate. Tutorials offered: Beginners level tutorial and a machine-learning methods related tutorial. | ||||||||||||||
10:57 | And there is more... We also offer full-length tutorials for these tools -- EBRAINS has more tools than short introduction talks fit into the morning... | ||||||||||||||
Tutorial offered: Hodgkin-Huxley Neuron Builder / Hippocampus Hub tools/web app Interactively build and optimize your own data-driven, biophysically detailed neuron model, via EBRAINS services and HPC facilities. | Luca Leonardo Bologna (cnr) | ||||||||||||||
Tutorial offered: NEST astrocyte module tutorial URL - (more details will be added to the agenda) | |||||||||||||||
Tutorial offered: NESTML tutorial NESTML is a domain-specific language for neuron and synapse models. The NESTML toolchain automatically generates high-performance code for these models, allowing them to be used in simulations of brain activity on several platforms, in particular the NEST Simulator running on HPC, but also the SpiNNaker neuromorphic platform. In this interactive tutorial, we will learn how to create a custom neuron model that exhibits dendritic action potentials, and combine it with a custom synaptic plasticity rule to create a network that learns and replays specific sequences of stimuli. | Charl Linssen (juelich) | ||||||||||||||
Tutorial offered: Vast parameter space explorations using L2L on EBRAINS This tutorial features a session on a hyper-parameter optimization framework, called L2L1, implementing the concept of learning to learn. | |||||||||||||||
Tutorial offered: Using Neo and Elephant for the Analysis of Electrophysiological Data | |||||||||||||||
Tutorial offered: EBRAINS tools for teaching (This tutorial might be of interest also for science school teachers in grade 8 and above to determine, whether some 'real research tools' could also be used in their teaching setting) EBRAINS tools for teaching brochure and overview poster | |||||||||||||||
11:00‑11:30 (30 min) | Coffee break | ||||||||||||||
11:30 | Parallel sessions Tool tutorial registrations will be collected in the registration step. We will then distribute the hands-on tutorials to the 3 parallel slots to maximize the possibility for attendants to visit their preferred tool tutorials. | ||||||||||||||
11:30‑13:00 (90 min) | Hands-on tutorials in parallel
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13:00‑13:50 (50 min) | Lunch (catering in the institute) (Optional during the lunch break: 15 min "European Institute for Neuromorphic Computing" building tour -- visit the BrainScaleS analog neuromorphic compute hardware system setup) | ||||||||||||||
13:50‑14:00 (10 min) | Group photo | ||||||||||||||
14:00‑16:00 (120 min) | Hands-on tutorials in parallel
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16:00‑16:30 (30 min) | Coffee break | ||||||||||||||
16:30‑18:30 (120 min) | Hands-on tutorials in parallel
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18:30‑19:50 (80 min) | Dinner (catering at the institute) and get together (Optional during the dinner break: 20 min "European Institute for Neuromorphic Computing" building tour -- visit the BrainScaleS analog neuromorphic compute hardware system setup) | ||||||||||||||
19:50‑20:50 (60 min) | (Optional: space and time for discussion groups) |