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EBRAINS Training on Brain Atlases and Simulation Services - Agenda

Tuesday, 13 September 2022
	Download programme in PDF. Summary The training event is tailored for members of Austrian Neuroscience Association, and will take place on 13 Sept 2022 in Klosterneuburg. Online registration is now closed, on-site registration is possible If you are planning to register on-site, please directly contact training-support@humanbrainproject.eu. If you will attend hands-on sessions, we may need information about your EBRAINS account to provide you access to certain computing resources you would use during the sessions. Speakers Download information on speakers. Venue Institute of Science & Technology Austria (ISTA) Am Campus 1 3400 Klosterneuburg AUSTRIA Event will take place at the Raffeisen Lecture Hall building. You should also easily recognise it - in front of the building is a round sculpture "Die verworfene Idee" by artist Esther Stocker. You can also see the Campus map here. show a map of the venue. Transport Options A shuttle bus with EBRAINS sign (company “dr. Richard”) has been arranged to take you from Vienna to Klosterneuburg in the morning, and back to Vienna in the afternoon. The bus is optional and it will leave on time, so please don’t be late if you intend to take it. To enter the bus, you will have to present this image on your phone (or printed). 07:00h in the morning of 13 Sept: bus pick up on the corner of Dr. Bohr Gasse and Viehmarktgasse in Vienna 18:30h in the afternoon of 13 Sept: bus pick up in front of the venue, drop off to the corner of Dr. Bohr Gasse and Viehmarktgasse in Vienna If you are arriving by car, please note that there is very limited parking space in the area, so we would recommend using the event shuttle bus instead. For access via car or public transport, more information is available here. Accommodation If you are not based in Vienna, we would recommend two hotels in Klosterneuburg: Hotel Schrannenhof Hotel Anker Technical and session information: Bring your laptop with you, food and a nice mood will be provided at the event! Have latest Firefox browser installed. Session I: Exercise 1 Knowledge Graph Search Exercise 2 Session II: Exercise 1 Siibra Python documentation Session IV: download latest ilastik desktop version here check out the ilastik wiki page here have latest Chrome or Chromium browser installed. download files download QuickNII (under “Download” select the package called QuickNII-ABAv3-2017.zip, online documentation is here) download VisuAlign (under “Download” select the package called VisuAlign-v0_9.zip, online documentation is here) Session V: check out the Elephant wiki page here Other The event sessions are in English and certificates of participation can be received upon request after the event. Please note the draft agenda is continuously updated with new information. For enquiries or issues, please contact training-support@humanbrainproject.eu
07:30‑08:15 (45 min)		Registration & Welcome Coffee
08:15‑08:30 (15 min)		Welcome Session Jan Bjaalie, HBP Infrastructure Director, University of Oslo Isabella Sarto-Jackson, President of Austrian Neuroscience Association, KLI Klosterneuburg (room: Raiffeisen Lecture Hall) (download presentation)
08:30‑09:00 (30 min)		Introduction to EBRAINS Research Infrastructure Jan Bjaalie, HBP Infrastructure Director, University of Oslo (room: Raiffeisen Lecture Hall) (download presentation)
09:00‑10:00 (60 min)		Plenary Session: The Atlas and Simulation Services on EBRAINS Wouter Klijn, Forschungszentrum Jülich (room: Raiffeisen Lecture Hall) (download presentation)
10:00‑10:15 (15 min)		Coffee Break
10:15‑12:15 (120 min)		Hands-on Session I: Knowledge Graph and Data Curation Oliver Schmid, EBRAINS AISBL (room: Raiffeisen Lecture Hall) (download presentation)
12:15‑13:15 (60 min)		Lunch Break
13:15‑15:15 (120 min)		Parallel Sessions Hands-on Session II: Human Brain Atlas and integration Timo Dickscheid, Forschungszentrum Jülich Sebastian Bludau, Forschungszentrum Jülich (room: Raiffeisen Lecture Hall) Hands-on Session III: The Web-based NEST Ecosystem on EBRAINS (Fokus NEST Desktop) Wouter Klijn, Forschungszentrum Jülich (room: Oberbank Ballroom)
15:15‑15:30 (15 min)		Coffee Break
15:30‑17:30 (120 min)		Parallel Sessions Hands-on Session IV: Mouse and rat atlases, QUINT, ilastik Ingvild Elise Bjerke, University of Oslo Tomaz Vieira, EMBL (room: Raiffeisen Lecture Hall) Hands-on Session V: Analyzing neural activity data with Neo and Elephant Moritz Kern, Forschungszentrum Jülich (room: Oberbank Ballroom)
17:30‑17:35 (5 min)		Break for room change
17:35‑18:00 (25 min)		Perspectives on career development and Q&A Jan Bjaalie, HBP Infrastructure Director, University of Oslo (room: Raiffeisen Lecture Hall)