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EBRAINS Infrastructure Training on Model Validation - Agenda

Tuesday, 4 May 2021

EBRAINS Infrastructure Training on Model Validation

In case of any organisational/technical issues, please contact: training-support@humanbrainproject.eu

Virtual meeting information:

  • This is an online Zoom Training (live talks, demos, hands-on tutorials, Q+A)
  • The Zoom video client software (free of charge, available for Windows, Mac, and Linux and also for iOS and Android) is required

Registration:

  • To register for this training event, an EBRAINS account is needed. EBRAINS registration is free of charge.
  • With your EBRAINS login credentials, you are able to register to this training event on Model Catalog and Validation Framework (also free of charge)
  • [Link to Registration] Registration is closed since 30 April 2021!
  • Registration deadline: 30 April 2021, 5pm (CET)

Meeting Login:

  • Meeting start time is 2pm
  • The Waiting room opens at 1:45pm

Times in the agenda are in shown in Central European Summer Time (e.g. Berlin) and UTC. You can also show e.g.: USA, Australia, Japan, China, India, ...)

Please note: The order and timing of the talks and sessions is now in final version!

.

CEST: 14:00
EDT: 08:00
CDT: 07:00
MDT: 06:00
PDT: 05:00
HST: 02:00
Part 1: Talks, Demos & Tutorials – Theory + Jupyter Notebook walkthroughs
  • Part 1 is for all interested to get a basic overview about EBRAINS and more theoretical in-depth knowledge to a specific service category EBRAINS is offering. This is followed by practical Jupyter Notebook walkthroughs and introduction to a suite of tools offering new capabilities for your own research.
CEST: 14:00‑14:25
EDT: 08:00‑08:25
CDT: 07:00‑07:25
MDT: 06:00‑06:25
PDT: 05:00‑05:25
HST: 02:00‑02:25
(25+5 min)
 Welcome to the Training - Getting started (Talk)

Link to chat channel

Andrew Davison (cnrs)
CEST: 14:30‑14:40
EDT: 08:30‑08:40
CDT: 07:30‑07:40
MDT: 06:30‑06:40
PDT: 05:30‑05:40
HST: 02:30‑02:40
(10 min)
 Introduction to EBRAINS (Talk)

Link to chat channel

Andrew Davison (cnrs)
CEST: 14:40‑14:50
EDT: 08:40‑08:50
CDT: 07:40‑07:50
MDT: 06:40‑06:50
PDT: 05:40‑05:50
HST: 02:40‑02:50
(10 min)
 EBRAINS Service "Data and Knowledge" (Talk)

Link to chat channel

Ida Aasebø (UIO)
CEST: 14:50‑15:00
EDT: 08:50‑09:00
CDT: 07:50‑08:00
MDT: 06:50‑07:00
PDT: 05:50‑06:00
HST: 02:50‑03:00
(10 min)
 EBRAINS Service "Simulation" (Talk)

Link to chat channel

Susanne Kunkel (nmbu)
CEST: 15:00‑15:40
EDT: 09:00‑09:40
CDT: 08:00‑08:40
MDT: 07:00‑07:40
PDT: 06:00‑06:40
HST: 03:00‑03:40
(40+5 min)
 Present Web Apps - Models and Tests (Talk + Demo)
  • UseCase: viewer -> view models & tests on app; Model Curation

Link to chat channel

Andrew Davison (CNRS)
CEST: 15:45‑16:00
EDT: 09:45‑10:00
CDT: 08:45‑09:00
MDT: 07:45‑08:00
PDT: 06:45‑07:00
HST: 03:45‑04:00
(15 min)
 Break
CEST: 16:00‑16:55
EDT: 10:00‑10:55
CDT: 09:00‑09:55
MDT: 08:00‑08:55
PDT: 07:00‑07:55
HST: 04:00‑04:55
(55+5 min)
 SciUnit Framework (Talk + Demos)

Link to chat channel

Rick Gerkin (ICON Lab, ASU)
CEST: 17:00‑17:15
EDT: 11:00‑11:15
CDT: 10:00‑10:15
MDT: 09:00‑09:15
PDT: 08:00‑08:15
HST: 05:00‑05:15
(15 min)
 Break
  • Group Foto (Zoom Screenshots)
CEST: 17:15‑18:55
EDT: 11:15‑12:55
CDT: 10:15‑11:55
MDT: 09:15‑10:55
PDT: 08:15‑09:55
HST: 05:15‑06:55
(100+5 min)
 SciUnit Framework Practice (Hands-on)
  • Sample model and test implementation

Link to chat channel

Shailesh Appukuttan (CNRS)
CEST: 19:00
EDT: 13:00
CDT: 12:00
MDT: 11:00
PDT: 10:00
HST: 07:00
End of Day 1

Wednesday, 5 May 2021
CEST: 14:00
EDT: 08:00
CDT: 07:00
MDT: 06:00
PDT: 05:00
HST: 02:00
Training on Model Validation - Continue on Part 1 - Day 2

Talks, Demos & Tutorials – Theory + Jupyter Notebook walkthroughs

Part 1 is for all interested to get a basic overview about EBRAINS and more theoretical in-depth knowledge to a specific service category EBRAINS is offering. This is followed by practical Jupyter Notebook walkthroughs and introduction to a suite of tools offering new capabilities for your own research.

CEST: 14:00‑14:40
EDT: 08:00‑08:40
CDT: 07:00‑07:40
MDT: 06:00‑06:40
PDT: 05:00‑05:40
HST: 02:00‑02:40
(40+5 min)
 Creating and Using a Test Package (Demo)
  • Packaging the tests created in SciUnit hands-on session and publishing it on PyPI

Link to chat channel

Shailesh Appukuttan (CNRS)
CEST: 14:45‑15:25
EDT: 08:45‑09:25
CDT: 07:45‑08:25
MDT: 06:45‑07:25
PDT: 05:45‑06:25
HST: 02:45‑03:25
(40+5 min)
 Present Web App - Models and Tests (Hands-on)
  • UseCase: developer --> create, edit models & tests on app using models from SciUnit hands-on

Link to chat channel

Shailesh Appukuttan (CNRS)
CEST: 15:30‑15:45
EDT: 09:30‑09:45
CDT: 08:30‑08:45
MDT: 07:30‑07:45
PDT: 06:30‑06:45
HST: 03:30‑03:45
(15 min)
 Break
CEST: 15:45‑16:40
EDT: 09:45‑10:40
CDT: 08:45‑09:40
MDT: 07:45‑08:40
PDT: 06:45‑07:40
HST: 03:45‑04:40
(55+5 min)
 VF Python Client (Hands-on)
  • Register models, tests created in SciUnit hands-on & running tests, handling results

Link to chat channel

Shailesh Appukuttan (CNRS)
CEST: 16:45‑17:25
EDT: 10:45‑11:25
CDT: 09:45‑10:25
MDT: 08:45‑09:25
PDT: 07:45‑08:25
HST: 04:45‑05:25
(40+5 min)
 Overview of HippoUnit (Talk + Demo)
  • Present tests - dev aspects, results briefly, utility

Link to chat channel

Sára Sáray (ELKH)
CEST: 17:30‑18:00
EDT: 11:30‑12:00
CDT: 10:30‑11:00
MDT: 09:30‑10:00
PDT: 08:30‑09:00
HST: 05:30‑06:00
(30 min)
 Break

Part 2: Diving into the details…
  • Each person/group gives a short overview of own/assigned model and the validations intended to be implemented during this session
  • Actively implementing validation tests – either on your own model or models provided by us
CEST: 18:00‑18:55
EDT: 12:00‑12:55
CDT: 11:00‑11:55
MDT: 10:00‑10:55
PDT: 09:00‑09:55
HST: 06:00‑06:55
(55+5 min)
 Flash Introductions - Each Model applicant
  • Present model, data, tests to be implemented

Link to chat channel

Each model applicant
CEST: 19:00‑19:25
EDT: 13:00‑13:25
CDT: 12:00‑12:25
MDT: 11:00‑11:25
PDT: 10:00‑10:25
HST: 07:00‑07:25
(25+5 min)
 Wrap-up and discussion (Talk)

Link to chat channel

Andrew Davison (cnrs)
CEST: 19:30
EDT: 13:30
CDT: 12:30
MDT: 11:30
PDT: 10:30
HST: 07:30
End of Day 2

Thursday, 6 May 2021

Model Validation - Day 3

Continue on Part 2: Diving into the details...

CEST: 14:00‑14:25
EDT: 08:00‑08:25
CDT: 07:00‑07:25
MDT: 06:00‑06:25
PDT: 05:00‑05:25
HST: 02:00‑02:25
(25+5 min)
 Running Validations on HPC Resources (Talk)
  • Demonstrate validation on Piz-Daint

Link to chat channel

Shailesh Appukuttan (CNRS)
CEST: 14:30‑15:00
EDT: 08:30‑09:00
CDT: 07:30‑08:00
MDT: 06:30‑07:00
PDT: 05:30‑06:00
HST: 02:30‑03:00
(30 min)
 Break

Project Work - Model applicants and tutors
CEST: 15:00‑18:00
EDT: 09:00‑12:00
CDT: 08:00‑11:00
MDT: 07:00‑10:00
PDT: 06:00‑09:00
HST: 03:00‑06:00
(180 min)
 Hands-on
  • Everyone works on their own project
All
CEST: 18:00
EDT: 12:00
CDT: 11:00
MDT: 10:00
PDT: 09:00
HST: 06:00
End of Day 3

Friday, 7 May 2021

Model Validation - Day 4

Continue on Project work...

CEST: 14:00‑17:00
EDT: 08:00‑11:00
CDT: 07:00‑10:00
MDT: 06:00‑09:00
PDT: 05:00‑08:00
HST: 02:00‑05:00
(180 min)
 Hands-on
  • Everyone works on their own projects
All
CEST: 17:00‑17:15
EDT: 11:00‑11:15
CDT: 10:00‑10:15
MDT: 09:00‑09:15
PDT: 08:00‑08:15
HST: 05:00‑05:15
(15 min)
 Break
CEST: 17:15‑18:15
EDT: 11:15‑12:15
CDT: 10:15‑11:15
MDT: 09:15‑10:15
PDT: 08:15‑09:15
HST: 05:15‑06:15
(60 min)
 Each group - Present results (Talk + Demo)All
CEST: 18:15
EDT: 12:15
CDT: 11:15
MDT: 10:15
PDT: 09:15
HST: 06:15
End of Day 4 - End of the Event
Contact: martina.schmalholz@kip.uni-heidelberg.de