| Tuesday, 23 November 2021 | |||
| HBP / EBRAINS: CodeJam #12: EBRAINS interactive usage and mutli-site worfklows | |||
| CET: 13:00 UTC: 12:00 | Opening Session | ||
| CET: 13:00‑13:05 UTC: 12:00‑12:05 | Short welcome and technical note from the Programme Committee | Andrew Davison (cnrs) | |
| CET: 13:05‑13:15 UTC: 12:05‑12:15 | Introduction to EBRAINS RI show presentation.pdf (public accessible), show talk video | Amaryllis Raouzaiou (athena) | |
| CET: 13:20 UTC: 12:20 | Session 1 - Accessing and analysing data in EBRAINS | ||
| CET: 13:20‑13:30 UTC: 12:20‑12:30 | Drive API / Python client show presentation.pdf (public accessible), (a video of this talk is available for EBRAINS account owners: show video) | Shailesh Appukuttan (cnrs) | |
| CET: 13:35‑13:45 UTC: 12:35‑12:45 | Collaboratory Buckets, UI and programmatic access show talk video | Alexis Durieux (ebrains) | |
| CET: 13:50‑14:00 UTC: 12:50‑13:00 | Large data transfers between ICEI sites show presentation.pdf (only with login + special group membership) | Sandra Diaz (juelich) | |
| CET: 14:05‑14:15 UTC: 13:05‑13:15 | Data analysis with Elephant (the presentation .pdf is accessible for meeting attendants from their 'personal page'), (a video of this talk is available for meeting attendants. Please check your personal meeting page (for EBRAINS account owners: personal meeting page and show video)) | Michael Denker (juelich) | |
| CET: 14:20‑14:30 UTC: 13:20‑13:30 | Siibra-python / Siibra API | Timo Dickscheid (juelich) | |
| CET: 14:35‑14:45 UTC: 13:35‑13:45 | Frites show presentation.pdf (public accessible), show talk video | Andrea Brovelli (amu) | |
| CET: 14:50 UTC: 13:50 | Session 2 - Programmatic access to the KG | ||
| CET: 14:50‑15:00 UTC: 13:50‑14:00 | General overview to openMINDS show presentation.pdf (public accessible), show talk video | Lyuba Zehl (juelich) | |
| CET: 15:05‑15:15 UTC: 14:05‑14:15 | openMINDS Python API show presentation.pdf (public accessible), show talk video | Stefan Köhnen (juelich) | |
| CET: 15:20‑15:30 UTC: 14:20‑14:30 | KG Query API and Builder | Oliver Schmid (ebrains) | |
| CET: 15:35‑15:45 UTC: 14:35‑14:45 | Fairgraph show presentation.pdf (public accessible), show talk video | Andrew Davison (cnrs) | |
| CET: 15:50‑16:20 UTC: 14:50‑15:20 | Coffee Break | ||
| CET: 16:20 UTC: 15:20 | Session 3 - Simulation Tools I | ||
| CET: 16:20‑16:30 UTC: 15:20‑15:30 | News on NEST show presentation.pdf (only with login + special group membership), (a video of this talk is available for meeting attendants. Please check your personal meeting page (for EBRAINS account owners: personal meeting page and show video)) | Dennis Terhorst (juelich) | |
| CET: 16:35‑16:45 UTC: 15:35‑15:45 | NESTML show presentation.pdf (public accessible), (a video of this talk is available for EBRAINS account owners: show video) | Charl Linssen (juelich) | |
| CET: 16:50‑17:00 UTC: 15:50‑16:00 | Arbor show presentation.pdf (public accessible), show talk video | Brent Huisman (juelich) | |
| CET: 17:05‑17:15 UTC: 16:05‑16:15 | Cellular simulation services show talk video | Stefano Antonel (epfl) | |
| CET: 17:20‑17:30 UTC: 16:20‑16:30 | Brain Scaffold Builder (BSB) design and use cases show presentation.pdf (public accessible), show talk video | claudia casellato (unipv) | |
| CET: 17:35 UTC: 16:35 | Project Work | ||
| CET: 17:35‑17:50 UTC: 16:35‑16:50 | Kick-off: proposals for break-out sessions for the week | all | |
| CET: 17:55‑18:30 UTC: 16:55‑17:30 | |||
| CET: 18:30 UTC: 17:30 | End of Day 1 (project work can go on) | ||
| Wednesday, 24 November 2021 | |||
| CET: 09:00 UTC: 08:00 | CodeJam#12, day II | ||
| CET: 09:00‑12:00 UTC: 08:00‑11:00 | Project Work | all | |
| CET: 12:00‑13:00 UTC: 11:00‑12:00 | Lunch Break | ||
| CET: 13:00 UTC: 12:00 | Session 4 – Building EBRAINS | ||
| CET: 13:00‑13:40 UTC: 12:00‑12:40 | Software Delivery and Installation for the Lab show presentation.pdf (public accessible), show talk video | Athanasios Karmas (athena) | |
| CET: 13:45‑13:55 UTC: 12:45‑12:55 | Creating an OIDC client and using it from Python | Axel Messinese (ebrains) | |
| CET: 14:00‑14:10 UTC: 13:00‑13:10 | Deploying a Javascript browser-side Community app | François Bougault (ebrains) | |
| CET: 14:15‑14:25 UTC: 13:15‑13:25 | EBRAINS Live Papers (a video of this talk is available for EBRAINS account owners: show video) | Shailesh Appukuttan (cnrs) | |
| CET: 14:30‑14:55 UTC: 13:30‑13:55 | Low threshold research | Dennis Terhorst (juelich) | |
| CET: 15:00‑15:05 UTC: 14:00‑14:05 | Group photo | ||
| CET: 15:05‑15:30 UTC: 14:05‑14:30 | Coffee Break | ||
| CET: 15:30 UTC: 14:30 | Session 5 – Workflows | ||
| CET: 15:30‑15:55 UTC: 14:30‑14:55 | Role of the SLU / State of the Showcases show presentation.pdf (public accessible), (a video of this talk is available for meeting attendants. Please check your personal meeting page (for EBRAINS account owners: personal meeting page and show video)) | Wouter Klijn (juelich) | |
| CET: 16:00‑16:40 UTC: 15:00‑15:40 | Standardized computational workflows show presentation.pdf (public accessible), video (restricted access) | sofia karvounari (athena) | |
| CET: 16:45‑16:55 UTC: 15:45‑15:55 | Provenance API show presentation.pdf (public accessible), (a video of this talk is available for EBRAINS account owners: show video) | Andrew Davison (cnrs) | |
| CET: 17:00 UTC: 16:00 | Project Work | ||
| CET: 17:00‑18:30 UTC: 16:00‑17:30 | Project 3: Demo / Tutorial / Hands-on session with CWL workflows (main room) video (restricted access) | Eleni Mathioulaki (athena) | |
| CET: 18:30 UTC: 17:30 | End of Day 2 (project work can go on) | ||
| Thursday, 25 November 2021 | |||
| CET: 09:00 UTC: 08:00 | CodeJam#12, day III | ||
| CET: 09:00‑12:00 UTC: 08:00‑11:00 | Project Work | all | |
| CET: 12:00‑13:00 UTC: 11:00‑12:00 | Lunch Break | ||
| CET: 13:00 UTC: 12:00 | Session 6 – EBRAINS Health Data Cloud | ||
| CET: 13:00‑13:25 UTC: 12:00‑12:25 | Technical and organizational measures for GDPR compliant Virtual Research Environments (VRE)(the presentation .pdf is accessible for meeting attendants from their 'personal page'), show talk video | Petra Ritter (charite) | |
| CET: 13:30‑13:55 UTC: 12:30‑12:55 | Demo: GDPR compliant TVB image processing container workflows with HPC on EBRAINS show presentation.pdf (public accessible), show talk video | Michael Schirner (charite) | |
| CET: 14:00‑14:25 UTC: 13:00‑13:25 | Demo: TVB GDPR compliant simulation workflows with HPC on EBRAINS show presentation.pdf (public accessible), show talk video | Paula Popa (codemart) | |
| CET: 14:30‑14:55 UTC: 13:30‑13:55 | Demo TVB-Cloud complex workflows in a GDPR compliant Virtual Research Environment(the presentation .pdf is accessible for meeting attendants from their 'personal page'), show talk video | Moyez Dharsee, Fan Dong, and Susan Evans (indocresearch) Patrik Bey (charite) | |
| CET: 15:00‑15:30 UTC: 14:00‑14:30 | Coffee Break | ||
| CET: 15:30 UTC: 14:30 | Session 7 - Simulation Tools II | ||
| CET: 15:30‑15:40 UTC: 14:30‑14:40 | SpiNNaker show presentation.pdf (public accessible), show talk video | Andrew Rowley (uman) | |
| CET: 15:45‑15:55 UTC: 14:45‑14:55 | LFPy show presentation.pdf (public accessible), (a video of this talk is available for meeting attendants. Please check your personal meeting page (for EBRAINS account owners: personal meeting page and show video)) | Espen Hagen (nmbu) | |
| CET: 16:00‑16:10 UTC: 15:00‑15:10 | Electrical model building toolset show presentation.pdf (only with login + special group membership), (a video of this talk is available for EBRAINS account owners: show video) | Tanguy Damart (epfl) | |
| CET: 16:15‑16:25 UTC: 15:15‑15:25 | BrainScales integration: Initiate your emulations via the Collaboratory show presentation.pdf (only with login + special group membership), show talk video | Eric Müller (uhei) | |
| CET: 16:30‑16:40 UTC: 15:30‑15:40 | Navigation neural model implemented in the NRP show presentation.pdf (public accessible), show talk video | Simone Coppolino (cnr) | |
| CET: 16:45‑16:55 UTC: 15:45‑15:55 | Neurorobotics platform show presentation.pdf (public accessible) | Fabrice Morin (tum) | |
| CET: 17:00‑17:10 UTC: 16:00‑16:10 | Building NEURON microcircuits using touch detection with Snudda show presentation.pdf (public accessible), show talk video | Johannes Hjorth (kth) | |
| CET: 17:14 UTC: 16:14 | Mikael Djurfeldt (kth) | ||
| CET: 17:15 UTC: 16:15 | Project Work | ||
| CET: 17:15‑18:45 UTC: 16:15‑17:45 | Project 7: BrainScaleS-2 interactive demo (20 min.) - (In the main zoom session) (a video of this talk is available for meeting attendants. Please check your personal meeting page (for EBRAINS account owners: personal meeting page and show video)) | Jakob Kaiser (uhei) | |
| CET: 18:45 UTC: 17:45 | End of Day 3 (project work can go on) | ||
| Friday, 26 November 2021 | |||
| CET: 09:00 UTC: 08:00 | CodeJam#12, day IV | ||
| CET: 09:00 UTC: 08:00 | Session 8 - BIDS computational modelling | ||
| CET: 09:00‑09:05 UTC: 08:00‑08:05 | Introduction(the presentation .pdf is accessible for meeting attendants from their 'personal page'), show talk video | Petra Ritter (charite) | |
| CET: 09:10‑09:25 UTC: 08:10‑08:25 | BIDS extension proposal comp modeling show presentation.pdf (public accessible), show talk video | Michael Schirner (charite) | |
| CET: 09:30‑09:45 UTC: 08:30‑08:45 | Demo of example data in BIDS comp modeling format(the presentation .pdf is accessible for meeting attendants from their 'personal page') | Jil Meier (charite) | |
| CET: 09:50‑11:50 UTC: 08:50‑10:50 | Project Work | Xiao Gui (juelich) | |
| CET: 12:00 UTC: 11:00 | End of the CodeJam#12 | ||