CodeJam #12 - Agenda

The 12th CodeJam will focus on EBRAINS infrastructure themes.

The CodeJam follows the successful model from the previous CodeJams: mainly interactive working sessions of developers and a few talks about general interest topics from the EBRAINS overall computing / service system.

The registration for the CodeJam is free of charge.

Dial-in

The dial-in information for the meeting is provided for the registered attendants on their individual personal page for the meeting.

Restricted access material

• Some talk videos and presentations may only be available on the personal page (for registered meeting attendants only).
• If you did not log in with your EBRAINS account yet: some additional material may be accessible on the logged in version of this agenda.

(no slides - showed things live)

(no-slides talk)

(no-slides talk)

(no-slides talk)

Work together with your collaborators in breakout rooms on your projects.

• Project 1: Mini-hackathon on fairgraph and the openMINDS Python API - Andrew Davison (cnrs) and Stefan Köhnen (jülich) - (Breakout room "Project 1)
• Project 2: Extending ebrains-drive Python client - Shailesh Appukuttan (cnrs)

Work together with your collaborators in breakout rooms on your projects.

show abstract

(no-slides demo of the live papers)

We are pleased to present a new service under EBRAINS called "Live Papers". EBRAINS Live Papers are interactive documents bringing together code, models, and data. It aims to enable researchers to easily access data resources employed in published studies and understand better the provenance of published results and figures. This significantly enhances the utility of scientific outputs, such as published models and datasets, and also supports the reproducibility of data analyses. Interactivity is a prominent feature with several integrated tools and services that allow users to download, visualise or simulate data, models and results presented in the corresponding publications. It allows for easily linking to resources in community databases such as EBRAINS, NeuroMorpho.org, ModelDB, the Allen Brain Atlas, thereby acting as an integrator of scientific resources spanning diverse data types such as models, morphologies, electrophysiological data and Jupyter notebooks. Issuance of a DOI further assists the citation of published data and models, thereby incentivising authors to publish and share such resources, and ensuring that they are duly acknowledged when these resources are reused. Community-based, collaborative modelling efforts can also greatly benefit from this platform.

show abstract

Before starting to the Coffee break, we would like to invite you to a "group photo" (= screen shots of the zoom gallery view). We want to use the group photo for HBP / EBRAINS dissemination and outreach = it will show up on the web, on twitter, ....

Please thus ONLY turn your camera on, if you are OK with that use (we will blank out the names, only the image will be in the released picture).

This session is of interest to Scientists and Developers of the Consortium who wish to have a more in-depth understanding of Standardized Computational Workflows.

show abstract

Work together with your collaborators in breakout rooms on your projects.

In parallel in breakout rooms -- not recorded:

• Project 4: Further discussion on “Low threshold research” - Dennis Terhorst (Zoom breakout room "Project 4")
• Project 5: Discuss new features to enhance functionality of Live Papers - Shailesh Appukuttan (Zoom breakout room "Project 5")

Work together with your collaborators in breakout rooms on your projects.

• CET 10:00h Project 6: PyNN related discussion in "PyNN related"

We will present technical and organizational measures that we employed to create a GDPR compliant Virtual Research Environment (VRE) for complex simulations and analytics of sensitive health data. The VRE forms the basis for the EBRAINS Health Data Cloud that provides coordinated governance and GDPR compliance, a federated ecosystem including code to data solutions, interoperability with a centralized Knowledge Graph for discoverability, access control, encryption, sandboxing and cross-site identity management, collaboration resources and an API gateway for seamless interaction between participating nodes/IT centers.

Talk cancelled.

Work together with your collaborators in breakout rooms on your projects.

Breakout rooms 1-15 are open through the day.

Special groups:

• CET 17:15h: BrainScaleS-2 demo: in the main zoom session
• CET 17:15h: Project 4: Further discussion on “Low threshold research” - Dennis Terhorst in "Room 2"

Project 8: Programmatic workflows with EBRAINS brain atlases using siibra-python - (Zoom breakout room "Project 7) - 60min.